Data Management with FHIR 0.1.0 - ci-build

Data Management with FHIR - version de développement local (intégration continue v0.1.0) construite par les outils de publication FHIR (HL7® FHIR® Standard). Voir le répertoire des versions publiées

## Logical Model: Specimen OMOP Table

Official URL: https://aphp.github.io/IG-fhir-dm/StructureDefinition/OMOPSpecimen | Version: 0.1.0
Draft as of 2026-04-16 | Computable Name: OMOPSpecimen

The specimen domain contains the records identifying biological samples from a person.

Utilisations:

- Ce Modèle logique n'est utilisé par aucun autre profil dans ce guide d'implémentation

Vous pouvez également vérifier les usages dans le FHIR IG Statistics

### Formal Views of Profile Content

Description of Profiles, Differentials, Snapshots and how the different presentations work.

- Key Elements Table
- Differential Table
- Snapshot Table
- Statistics/References
- All

Nom | Drapeaux | Card. | Type | Description et contraintes Filter: Bindings Contraintes Obligations
--- | --- | --- | --- | ---
OMOPSpecimen |  | 0..* | Base | Specimen OMOP Table Les instances de ce modèle logique peuvent être la cible d'une référence
specimen_id |  | 1..1 | integer | Specimen Identifier
person_id |  | 1..1 | Reference(Person OMOP Table) | Person
specimen_concept_id |  | 1..1 | Reference(Concept OMOP Table) | Specimen
specimen_type_concept_id |  | 1..1 | Reference(Concept OMOP Table) | Specimen Type
specimen_date |  | 1..1 | date | Specimen Date
specimen_datetime |  | 0..1 | dateTime | Specimen Datetime
quantity |  | 0..1 | integer | Quantity
unit_concept_id |  | 0..1 | Reference(Concept OMOP Table) | Unit
anatomic_site_concept_id |  | 0..1 | Reference(Concept OMOP Table) | Anatomic Site
disease_status_concept_id |  | 0..1 | Reference(Concept OMOP Table) | Disease Status
specimen_source_id |  | 0..1 | string | Specimen Source
specimen_source_value |  | 0..1 | string | Specimen Source Value
unit_source_value |  | 0..1 | string | Unit Source Value
anatomic_site_source_value |  | 0..1 | string | Anatomic Site Source Value
disease_status_source_value |  | 0..1 | string | Disease Site Source Value
Documentation pour ce format

This structure is derived from Base

Nom | Drapeaux | Card. | Type | Description et contraintes Filter: Bindings Contraintes Obligations
--- | --- | --- | --- | ---
OMOPSpecimen |  | 0..* | Base | Specimen OMOP Table Les instances de ce modèle logique peuvent être la cible d'une référence
specimen_id |  | 1..1 | integer | Specimen Identifier
person_id |  | 1..1 | Reference(Person OMOP Table) | Person
specimen_concept_id |  | 1..1 | Reference(Concept OMOP Table) | Specimen
specimen_type_concept_id |  | 1..1 | Reference(Concept OMOP Table) | Specimen Type
specimen_date |  | 1..1 | date | Specimen Date
specimen_datetime |  | 0..1 | dateTime | Specimen Datetime
quantity |  | 0..1 | integer | Quantity
unit_concept_id |  | 0..1 | Reference(Concept OMOP Table) | Unit
anatomic_site_concept_id |  | 0..1 | Reference(Concept OMOP Table) | Anatomic Site
disease_status_concept_id |  | 0..1 | Reference(Concept OMOP Table) | Disease Status
specimen_source_id |  | 0..1 | string | Specimen Source
specimen_source_value |  | 0..1 | string | Specimen Source Value
unit_source_value |  | 0..1 | string | Unit Source Value
anatomic_site_source_value |  | 0..1 | string | Anatomic Site Source Value
disease_status_source_value |  | 0..1 | string | Disease Site Source Value
Documentation pour ce format

Nom | Drapeaux | Card. | Type | Description et contraintes Filter: Bindings Contraintes Obligations
--- | --- | --- | --- | ---
OMOPSpecimen |  | 0..* | Base | Specimen OMOP Table Les instances de ce modèle logique peuvent être la cible d'une référence
specimen_id |  | 1..1 | integer | Specimen Identifier
person_id |  | 1..1 | Reference(Person OMOP Table) | Person
specimen_concept_id |  | 1..1 | Reference(Concept OMOP Table) | Specimen
specimen_type_concept_id |  | 1..1 | Reference(Concept OMOP Table) | Specimen Type
specimen_date |  | 1..1 | date | Specimen Date
specimen_datetime |  | 0..1 | dateTime | Specimen Datetime
quantity |  | 0..1 | integer | Quantity
unit_concept_id |  | 0..1 | Reference(Concept OMOP Table) | Unit
anatomic_site_concept_id |  | 0..1 | Reference(Concept OMOP Table) | Anatomic Site
disease_status_concept_id |  | 0..1 | Reference(Concept OMOP Table) | Disease Status
specimen_source_id |  | 0..1 | string | Specimen Source
specimen_source_value |  | 0..1 | string | Specimen Source Value
unit_source_value |  | 0..1 | string | Unit Source Value
anatomic_site_source_value |  | 0..1 | string | Anatomic Site Source Value
disease_status_source_value |  | 0..1 | string | Disease Site Source Value
Documentation pour ce format

This structure is derived from Base

Résumé

Obligatoire : 0 élément(5 éléments obligatoire(s) imbriqué(s))

Structures

Cette structure fait référence à ces autres structures:

- Person OMOP Table (https://aphp.github.io/IG-fhir-dm/StructureDefinition/OMOPPerson)
- Concept OMOP Table (https://aphp.github.io/IG-fhir-dm/StructureDefinition/OMOPConcept)

Key Elements View

Nom | Drapeaux | Card. | Type | Description et contraintes Filter: Bindings Contraintes Obligations
--- | --- | --- | --- | ---
OMOPSpecimen |  | 0..* | Base | Specimen OMOP Table Les instances de ce modèle logique peuvent être la cible d'une référence
specimen_id |  | 1..1 | integer | Specimen Identifier
person_id |  | 1..1 | Reference(Person OMOP Table) | Person
specimen_concept_id |  | 1..1 | Reference(Concept OMOP Table) | Specimen
specimen_type_concept_id |  | 1..1 | Reference(Concept OMOP Table) | Specimen Type
specimen_date |  | 1..1 | date | Specimen Date
specimen_datetime |  | 0..1 | dateTime | Specimen Datetime
quantity |  | 0..1 | integer | Quantity
unit_concept_id |  | 0..1 | Reference(Concept OMOP Table) | Unit
anatomic_site_concept_id |  | 0..1 | Reference(Concept OMOP Table) | Anatomic Site
disease_status_concept_id |  | 0..1 | Reference(Concept OMOP Table) | Disease Status
specimen_source_id |  | 0..1 | string | Specimen Source
specimen_source_value |  | 0..1 | string | Specimen Source Value
unit_source_value |  | 0..1 | string | Unit Source Value
anatomic_site_source_value |  | 0..1 | string | Anatomic Site Source Value
disease_status_source_value |  | 0..1 | string | Disease Site Source Value
Documentation pour ce format

Differential View

This structure is derived from Base

Nom | Drapeaux | Card. | Type | Description et contraintes Filter: Bindings Contraintes Obligations
--- | --- | --- | --- | ---
OMOPSpecimen |  | 0..* | Base | Specimen OMOP Table Les instances de ce modèle logique peuvent être la cible d'une référence
specimen_id |  | 1..1 | integer | Specimen Identifier
person_id |  | 1..1 | Reference(Person OMOP Table) | Person
specimen_concept_id |  | 1..1 | Reference(Concept OMOP Table) | Specimen
specimen_type_concept_id |  | 1..1 | Reference(Concept OMOP Table) | Specimen Type
specimen_date |  | 1..1 | date | Specimen Date
specimen_datetime |  | 0..1 | dateTime | Specimen Datetime
quantity |  | 0..1 | integer | Quantity
unit_concept_id |  | 0..1 | Reference(Concept OMOP Table) | Unit
anatomic_site_concept_id |  | 0..1 | Reference(Concept OMOP Table) | Anatomic Site
disease_status_concept_id |  | 0..1 | Reference(Concept OMOP Table) | Disease Status
specimen_source_id |  | 0..1 | string | Specimen Source
specimen_source_value |  | 0..1 | string | Specimen Source Value
unit_source_value |  | 0..1 | string | Unit Source Value
anatomic_site_source_value |  | 0..1 | string | Anatomic Site Source Value
disease_status_source_value |  | 0..1 | string | Disease Site Source Value
Documentation pour ce format

Snapshot View

Nom | Drapeaux | Card. | Type | Description et contraintes Filter: Bindings Contraintes Obligations
--- | --- | --- | --- | ---
OMOPSpecimen |  | 0..* | Base | Specimen OMOP Table Les instances de ce modèle logique peuvent être la cible d'une référence
specimen_id |  | 1..1 | integer | Specimen Identifier
person_id |  | 1..1 | Reference(Person OMOP Table) | Person
specimen_concept_id |  | 1..1 | Reference(Concept OMOP Table) | Specimen
specimen_type_concept_id |  | 1..1 | Reference(Concept OMOP Table) | Specimen Type
specimen_date |  | 1..1 | date | Specimen Date
specimen_datetime |  | 0..1 | dateTime | Specimen Datetime
quantity |  | 0..1 | integer | Quantity
unit_concept_id |  | 0..1 | Reference(Concept OMOP Table) | Unit
anatomic_site_concept_id |  | 0..1 | Reference(Concept OMOP Table) | Anatomic Site
disease_status_concept_id |  | 0..1 | Reference(Concept OMOP Table) | Disease Status
specimen_source_id |  | 0..1 | string | Specimen Source
specimen_source_value |  | 0..1 | string | Specimen Source Value
unit_source_value |  | 0..1 | string | Unit Source Value
anatomic_site_source_value |  | 0..1 | string | Anatomic Site Source Value
disease_status_source_value |  | 0..1 | string | Disease Site Source Value
Documentation pour ce format

This structure is derived from Base

Résumé

Obligatoire : 0 élément(5 éléments obligatoire(s) imbriqué(s))

Structures

Cette structure fait référence à ces autres structures:

- Person OMOP Table (https://aphp.github.io/IG-fhir-dm/StructureDefinition/OMOPPerson)
- Concept OMOP Table (https://aphp.github.io/IG-fhir-dm/StructureDefinition/OMOPConcept)

Other representations of profile: CSV, Excel