@prefix fhir: . @prefix owl: . @prefix rdf: . @prefix rdfs: . @prefix xsd: . # - resource ------------------------------------------------------------------- a fhir:StructureMap ; fhir:nodeRole fhir:treeRoot ; fhir:id [ fhir:v "CoreSimpleObservation2OMOPMeasurement"] ; # fhir:text [ fhir:status [ fhir:v "generated" ] ; fhir:div [ fhir:v "

Narratif généré : StructureMap CoreSimpleObservation2OMOPMeasurement

#xD;\nmap \"https://interop.aphp.fr/ig/fhir/dm/StructureMap/CoreSimpleObservation2OMOPMeasurement\" = \"CoreSimpleObservation2OMOPMeasurement\"#xD;\n#xD;\n// Mapping simple Observation laboratory resources to Measurement OMOP Domain#xD;\n#xD;\nuses \"http://hl7.org/fhir/StructureDefinition/Observation\" alias LabObs as source#xD;\nuses \"https://interop.aphp.fr/ig/fhir/dm/StructureDefinition/OMOPMeasurement\" alias MeasurementTable as target#xD;\n#xD;\ngroup SimpleObservation(source src : LabObs, target tgt : MeasurementTable) {#xD;\n  src.subject as srcSubject -> tgt.person_id = srcSubject \"setSubject\"; // reference impropre dans le monde OMOP mais permet d'illustrer l'information qui doit être utilisée pour retrouver la bonne OMOPPerson#xD;\n  src.code as srcCode -> tgt.measurement_concept_id = create('Reference') as tgtReference then {#xD;\n    srcCode.coding as srcCoding ->  translate(srcCoding, 'https://interop.aphp.fr/ig/fhir/dm/ConceptMap/LabAnalyses', 'code') as measurementCode,  tgtReference.reference = append('Concept/', measurementCode) \"setMeasurementConcept\";#xD;\n  } \"createMeasurementConcept\";#xD;\n  src.effective : dateTime as srcDateTime then {#xD;\n    srcDateTime -> tgt.measurement_datetime = srcDateTime \"setDateTime\";#xD;\n    srcDateTime -> tgt.measurement_date = (%srcDateTime.toString().substring(0, 10)) \"setDateNotTime\";#xD;\n  } \"SetDate\";#xD;\n  src.value : Quantity as srcValueQuantity then {#xD;\n    srcValueQuantity.value as srcResultValue -> tgt.value_as_number = srcResultValue \"setResultValue\";#xD;\n    srcValueQuantity -> tgt.operator_concept_id = create('Reference') as tgtReference then {#xD;\n      srcValueQuantity.comparator as srcValueComparator ->  translate(srcValueComparator, 'https://interop.aphp.fr/ig/fhir/dm/ConceptMap/LabComparator', 'code') as comparatorCode,  tgtReference.reference = append('Concept/', comparatorCode) \"setComparatorConcept\";#xD;\n    } \"createComparatorConcept\";#xD;\n    srcValueQuantity -> tgt.unit_concept_id = create('Reference') as tgtReference then {#xD;\n      srcValueQuantity.code as srcValueCode ->  translate(srcValueCode, 'https://interop.aphp.fr/ig/fhir/dm/ConceptMap/LabUnit', 'code') as unitCode,  tgtReference.reference = append('Concept/', unitCode) \"createUnitConcept\";#xD;\n    } \"setUnitConcept\";#xD;\n    srcValueQuantity.code as srcValueCode -> tgt.unit_source_value = srcValueCode \"setUnitSourceValue\";#xD;\n  } \"SetValue\";#xD;\n  src.referenceRange as srcRange then {#xD;\n    srcRange.low as srcRangeLow then {#xD;\n      srcRangeLow.value as srcRangeLowValue -> tgt.range_low = srcRangeLowValue \"setRangeLow1\";#xD;\n    } \"setRangeLow0\";#xD;\n    srcRange.high as srcRangeHigh then {#xD;\n      srcRangeHigh.value as srcRangeHighValue -> tgt.range_high = srcRangeHighValue \"setRangeHigh1\";#xD;\n    } \"setRangeHigh0\";#xD;\n  } \"setRange\";#xD;\n  src.performer as srcPerformer -> tgt.provider_id = srcPerformer \"setPerformer\"; // reference impropre dans le monde OMOP mais permet d'illustrer l'information qui doit être utilisée pour retrouver le bon OMOPProvider#xD;\n}#xD;\n#xD;\n
"^^rdf:XMLLiteral ] ] ; # fhir:url [ fhir:v "https://interop.aphp.fr/ig/fhir/dm/StructureMap/CoreSimpleObservation2OMOPMeasurement"^^xsd:anyURI ; fhir:l ] ; # fhir:version [ fhir:v "0.1.0"] ; # fhir:name [ fhir:v "CoreSimpleObservation2OMOPMeasurement"] ; # fhir:title [ fhir:v "Mapping simple Observation laboratory resources to Measurement OMOP Domain"] ; # fhir:status [ fhir:v "draft"] ; # fhir:date [ fhir:v "2026-04-16T14:35:38+00:00"^^xsd:dateTime] ; # fhir:publisher [ fhir:v "AP-HP"] ; # fhir:contact ( [ fhir:name [ fhir:v "AP-HP" ] ; fhir:telecom ( [ fhir:system [ fhir:v "url" ] ; fhir:value [ fhir:v "https://aphp.fr" ] ] ) ] ) ; # fhir:description [ fhir:v "Mapping simple Observation laboratory resources to Measurement OMOP Domain"] ; # fhir:jurisdiction ( [ fhir:coding ( [ fhir:system [ fhir:v "urn:iso:std:iso:3166"^^xsd:anyURI ; fhir:l ] ; fhir:code [ fhir:v "FR" ] ] ) ] ) ; # fhir:structure ( [ fhir:url [ fhir:v "http://hl7.org/fhir/StructureDefinition/Observation"^^xsd:anyURI ; fhir:l ] ; fhir:mode [ fhir:v "source" ] ; fhir:alias [ fhir:v "LabObs" ] ] [ fhir:url [ fhir:v "https://interop.aphp.fr/ig/fhir/dm/StructureDefinition/OMOPMeasurement"^^xsd:anyURI ; fhir:l ] ; fhir:mode [ fhir:v "target" ] ; fhir:alias [ fhir:v "MeasurementTable" ] ] ) ; # fhir:group ( [ fhir:name [ fhir:v "SimpleObservation" ] ; fhir:typeMode [ fhir:v "none" ] ; fhir:input ( [ fhir:name [ fhir:v "src" ] ; fhir:type [ fhir:v "LabObs" ] ; fhir:mode [ fhir:v "source" ] ] [ fhir:name [ fhir:v "tgt" ] ; fhir:type [ fhir:v "MeasurementTable" ] ; fhir:mode [ fhir:v "target" ] ] ) ; fhir:rule ( [ fhir:name [ fhir:v "setSubject" ] ; fhir:source ( [ fhir:context [ fhir:v "src" ] ; fhir:element [ fhir:v "subject" ] ; fhir:variable [ fhir:v "srcSubject" ] ] ) ; fhir:target ( [ fhir:context [ fhir:v "tgt" ] ; fhir:contextType [ fhir:v "variable" ] ; fhir:element [ fhir:v "person_id" ] ; fhir:transform [ fhir:v "copy" ] ; fhir:parameter ( [ fhir:value [ a fhir:Id ; fhir:v "srcSubject" ] ] ) ] ) ; fhir:documentation [ fhir:v "reference impropre dans le monde OMOP mais permet d'illustrer l'information qui doit être utilisée pour retrouver la bonne OMOPPerson" ] ] [ fhir:name [ fhir:v "createMeasurementConcept" ] ; fhir:source ( [ fhir:context [ fhir:v "src" ] ; fhir:element [ fhir:v "code" ] ; fhir:variable [ fhir:v "srcCode" ] ] ) ; fhir:target ( [ fhir:context [ fhir:v "tgt" ] ; fhir:contextType [ fhir:v "variable" ] ; fhir:element [ fhir:v "measurement_concept_id" ] ; fhir:variable [ fhir:v "tgtReference" ] ; fhir:transform [ fhir:v "create" ] ; fhir:parameter ( [ fhir:value [ a fhir:String ; fhir:v "Reference" ] ] ) ] ) ; fhir:rule ( [ fhir:name [ fhir:v "setMeasurementConcept" ] ; fhir:source ( [ fhir:context [ fhir:v "srcCode" ] ; fhir:element [ fhir:v "coding" ] ; fhir:variable [ fhir:v "srcCoding" ] ] ) ; fhir:target ( [ fhir:contextType [ fhir:v "variable" ] ; fhir:variable [ fhir:v "measurementCode" ] ; fhir:transform [ fhir:v "translate" ] ; fhir:parameter ( [ fhir:value [ a fhir:Id ; fhir:v "srcCoding" ] ] [ fhir:value [ a fhir:String ; fhir:v "https://interop.aphp.fr/ig/fhir/dm/ConceptMap/LabAnalyses" ] ] [ fhir:value [ a fhir:String ; fhir:v "code" ] ] ) ] [ fhir:context [ fhir:v "tgtReference" ] ; fhir:contextType [ fhir:v "variable" ] ; fhir:element [ fhir:v "reference" ] ; fhir:transform [ fhir:v "append" ] ; fhir:parameter ( [ fhir:value [ a fhir:String ; fhir:v "Concept/" ] ] [ fhir:value [ a fhir:Id ; fhir:v "measurementCode" ] ] ) ] ) ] ) ] [ fhir:name [ fhir:v "SetDate" ] ; fhir:source ( [ fhir:context [ fhir:v "src" ] ; fhir:type [ fhir:v "dateTime" ] ; fhir:element [ fhir:v "effective" ] ; fhir:variable [ fhir:v "srcDateTime" ] ] ) ; fhir:rule ( [ fhir:name [ fhir:v "setDateTime" ] ; fhir:source ( [ fhir:context [ fhir:v "srcDateTime" ] ] ) ; fhir:target ( [ fhir:context [ fhir:v "tgt" ] ; fhir:contextType [ fhir:v "variable" ] ; fhir:element [ fhir:v "measurement_datetime" ] ; fhir:transform [ fhir:v "copy" ] ; fhir:parameter ( [ fhir:value [ a fhir:Id ; fhir:v "srcDateTime" ] ] ) ] ) ] [ fhir:name [ fhir:v "setDateNotTime" ] ; fhir:source ( [ fhir:context [ fhir:v "srcDateTime" ] ] ) ; fhir:target ( [ fhir:context [ fhir:v "tgt" ] ; fhir:contextType [ fhir:v "variable" ] ; fhir:element [ fhir:v "measurement_date" ] ; fhir:transform [ fhir:v "evaluate" ] ; fhir:parameter ( [ fhir:value [ a fhir:String ; fhir:v "%srcDateTime.toString().substring(0, 10)" ] ] ) ] ) ] ) ] [ fhir:name [ fhir:v "SetValue" ] ; fhir:source ( [ fhir:context [ fhir:v "src" ] ; fhir:type [ fhir:v "Quantity" ] ; fhir:element [ fhir:v "value" ] ; fhir:variable [ fhir:v "srcValueQuantity" ] ] ) ; fhir:rule ( [ fhir:name [ fhir:v "setResultValue" ] ; fhir:source ( [ fhir:context [ fhir:v "srcValueQuantity" ] ; fhir:element [ fhir:v "value" ] ; fhir:variable [ fhir:v "srcResultValue" ] ] ) ; fhir:target ( [ fhir:context [ fhir:v "tgt" ] ; fhir:contextType [ fhir:v "variable" ] ; fhir:element [ fhir:v "value_as_number" ] ; fhir:transform [ fhir:v "copy" ] ; fhir:parameter ( [ fhir:value [ a fhir:Id ; fhir:v "srcResultValue" ] ] ) ] ) ] [ fhir:name [ fhir:v "createComparatorConcept" ] ; fhir:source ( [ fhir:context [ fhir:v "srcValueQuantity" ] ] ) ; fhir:target ( [ fhir:context [ fhir:v "tgt" ] ; fhir:contextType [ fhir:v "variable" ] ; fhir:element [ fhir:v "operator_concept_id" ] ; fhir:variable [ fhir:v "tgtReference" ] ; fhir:transform [ fhir:v "create" ] ; fhir:parameter ( [ fhir:value [ a fhir:String ; fhir:v "Reference" ] ] ) ] ) ; fhir:rule ( [ fhir:name [ fhir:v "setComparatorConcept" ] ; fhir:source ( [ fhir:context [ fhir:v "srcValueQuantity" ] ; fhir:element [ fhir:v "comparator" ] ; fhir:variable [ fhir:v "srcValueComparator" ] ] ) ; fhir:target ( [ fhir:contextType [ fhir:v "variable" ] ; fhir:variable [ fhir:v "comparatorCode" ] ; fhir:transform [ fhir:v "translate" ] ; fhir:parameter ( [ fhir:value [ a fhir:Id ; fhir:v "srcValueComparator" ] ] [ fhir:value [ a fhir:String ; fhir:v "https://interop.aphp.fr/ig/fhir/dm/ConceptMap/LabComparator" ] ] [ fhir:value [ a fhir:String ; fhir:v "code" ] ] ) ] [ fhir:context [ fhir:v "tgtReference" ] ; fhir:contextType [ fhir:v "variable" ] ; fhir:element [ fhir:v "reference" ] ; fhir:transform [ fhir:v "append" ] ; fhir:parameter ( [ fhir:value [ a fhir:String ; fhir:v "Concept/" ] ] [ fhir:value [ a fhir:Id ; fhir:v "comparatorCode" ] ] ) ] ) ] ) ] [ fhir:name [ fhir:v "setUnitConcept" ] ; fhir:source ( [ fhir:context [ fhir:v "srcValueQuantity" ] ] ) ; fhir:target ( [ fhir:context [ fhir:v "tgt" ] ; fhir:contextType [ fhir:v "variable" ] ; fhir:element [ fhir:v "unit_concept_id" ] ; fhir:variable [ fhir:v "tgtReference" ] ; fhir:transform [ fhir:v "create" ] ; fhir:parameter ( [ fhir:value [ a fhir:String ; fhir:v "Reference" ] ] ) ] ) ; fhir:rule ( [ fhir:name [ fhir:v "createUnitConcept" ] ; fhir:source ( [ fhir:context [ fhir:v "srcValueQuantity" ] ; fhir:element [ fhir:v "code" ] ; fhir:variable [ fhir:v "srcValueCode" ] ] ) ; fhir:target ( [ fhir:contextType [ fhir:v "variable" ] ; fhir:variable [ fhir:v "unitCode" ] ; fhir:transform [ fhir:v "translate" ] ; fhir:parameter ( [ fhir:value [ a fhir:Id ; fhir:v "srcValueCode" ] ] [ fhir:value [ a fhir:String ; fhir:v "https://interop.aphp.fr/ig/fhir/dm/ConceptMap/LabUnit" ] ] [ fhir:value [ a fhir:String ; fhir:v "code" ] ] ) ] [ fhir:context [ fhir:v "tgtReference" ] ; fhir:contextType [ fhir:v "variable" ] ; fhir:element [ fhir:v "reference" ] ; fhir:transform [ fhir:v "append" ] ; fhir:parameter ( [ fhir:value [ a fhir:String ; fhir:v "Concept/" ] ] [ fhir:value [ a fhir:Id ; fhir:v "unitCode" ] ] ) ] ) ] ) ] [ fhir:name [ fhir:v "setUnitSourceValue" ] ; fhir:source ( [ fhir:context [ fhir:v "srcValueQuantity" ] ; fhir:element [ fhir:v "code" ] ; fhir:variable [ fhir:v "srcValueCode" ] ] ) ; fhir:target ( [ fhir:context [ fhir:v "tgt" ] ; fhir:contextType [ fhir:v "variable" ] ; fhir:element [ fhir:v "unit_source_value" ] ; fhir:transform [ fhir:v "copy" ] ; fhir:parameter ( [ fhir:value [ a fhir:Id ; fhir:v "srcValueCode" ] ] ) ] ) ] ) ] [ fhir:name [ fhir:v "setRange" ] ; fhir:source ( [ fhir:context [ fhir:v "src" ] ; fhir:element [ fhir:v "referenceRange" ] ; fhir:variable [ fhir:v "srcRange" ] ] ) ; fhir:rule ( [ fhir:name [ fhir:v "setRangeLow0" ] ; fhir:source ( [ fhir:context [ fhir:v "srcRange" ] ; fhir:element [ fhir:v "low" ] ; fhir:variable [ fhir:v "srcRangeLow" ] ] ) ; fhir:rule ( [ fhir:name [ fhir:v "setRangeLow1" ] ; fhir:source ( [ fhir:context [ fhir:v "srcRangeLow" ] ; fhir:element [ fhir:v "value" ] ; fhir:variable [ fhir:v "srcRangeLowValue" ] ] ) ; fhir:target ( [ fhir:context [ fhir:v "tgt" ] ; fhir:contextType [ fhir:v "variable" ] ; fhir:element [ fhir:v "range_low" ] ; fhir:transform [ fhir:v "copy" ] ; fhir:parameter ( [ fhir:value [ a fhir:Id ; fhir:v "srcRangeLowValue" ] ] ) ] ) ] ) ] [ fhir:name [ fhir:v "setRangeHigh0" ] ; fhir:source ( [ fhir:context [ fhir:v "srcRange" ] ; fhir:element [ fhir:v "high" ] ; fhir:variable [ fhir:v "srcRangeHigh" ] ] ) ; fhir:rule ( [ fhir:name [ fhir:v "setRangeHigh1" ] ; fhir:source ( [ fhir:context [ fhir:v "srcRangeHigh" ] ; fhir:element [ fhir:v "value" ] ; fhir:variable [ fhir:v "srcRangeHighValue" ] ] ) ; fhir:target ( [ fhir:context [ fhir:v "tgt" ] ; fhir:contextType [ fhir:v "variable" ] ; fhir:element [ fhir:v "range_high" ] ; fhir:transform [ fhir:v "copy" ] ; fhir:parameter ( [ fhir:value [ a fhir:Id ; fhir:v "srcRangeHighValue" ] ] ) ] ) ] ) ] ) ] [ fhir:name [ fhir:v "setPerformer" ] ; fhir:source ( [ fhir:context [ fhir:v "src" ] ; fhir:element [ fhir:v "performer" ] ; fhir:variable [ fhir:v "srcPerformer" ] ] ) ; fhir:target ( [ fhir:context [ fhir:v "tgt" ] ; fhir:contextType [ fhir:v "variable" ] ; fhir:element [ fhir:v "provider_id" ] ; fhir:transform [ fhir:v "copy" ] ; fhir:parameter ( [ fhir:value [ a fhir:Id ; fhir:v "srcPerformer" ] ] ) ] ) ; fhir:documentation [ fhir:v "reference impropre dans le monde OMOP mais permet d'illustrer l'information qui doit être utilisée pour retrouver le bon OMOPProvider" ] ] ) ] ) . # # -------------------------------------------------------------------------------------