{ "resourceType" : "StructureMap", "id" : "CoreSimpleObservation2OMOPMeasurement", "text" : { "status" : "generated", "div" : "

Narratif généré : StructureMap CoreSimpleObservation2OMOPMeasurement

\r\nmap "https://interop.aphp.fr/ig/fhir/dm/StructureMap/CoreSimpleObservation2OMOPMeasurement" = "CoreSimpleObservation2OMOPMeasurement"\r\n\r\n// Mapping simple Observation laboratory resources to Measurement OMOP Domain\r\n\r\nuses "http://hl7.org/fhir/StructureDefinition/Observation" alias LabObs as source\r\nuses "https://interop.aphp.fr/ig/fhir/dm/StructureDefinition/OMOPMeasurement" alias MeasurementTable as target\r\n\r\ngroup SimpleObservation(source src : LabObs, target tgt : MeasurementTable) {\r\n  src.subject as srcSubject -> tgt.person_id = srcSubject "setSubject"; // reference impropre dans le monde OMOP mais permet d'illustrer l'information qui doit être utilisée pour retrouver la bonne OMOPPerson\r\n  src.code as srcCode -> tgt.measurement_concept_id = create('Reference') as tgtReference then {\r\n    srcCode.coding as srcCoding ->  translate(srcCoding, 'https://interop.aphp.fr/ig/fhir/dm/ConceptMap/LabAnalyses', 'code') as measurementCode,  tgtReference.reference = append('Concept/', measurementCode) "setMeasurementConcept";\r\n  } "createMeasurementConcept";\r\n  src.effective : dateTime as srcDateTime then {\r\n    srcDateTime -> tgt.measurement_datetime = srcDateTime "setDateTime";\r\n    srcDateTime -> tgt.measurement_date = (%srcDateTime.toString().substring(0, 10)) "setDateNotTime";\r\n  } "SetDate";\r\n  src.value : Quantity as srcValueQuantity then {\r\n    srcValueQuantity.value as srcResultValue -> tgt.value_as_number = srcResultValue "setResultValue";\r\n    srcValueQuantity -> tgt.operator_concept_id = create('Reference') as tgtReference then {\r\n      srcValueQuantity.comparator as srcValueComparator ->  translate(srcValueComparator, 'https://interop.aphp.fr/ig/fhir/dm/ConceptMap/LabComparator', 'code') as comparatorCode,  tgtReference.reference = append('Concept/', comparatorCode) "setComparatorConcept";\r\n    } "createComparatorConcept";\r\n    srcValueQuantity -> tgt.unit_concept_id = create('Reference') as tgtReference then {\r\n      srcValueQuantity.code as srcValueCode ->  translate(srcValueCode, 'https://interop.aphp.fr/ig/fhir/dm/ConceptMap/LabUnit', 'code') as unitCode,  tgtReference.reference = append('Concept/', unitCode) "createUnitConcept";\r\n    } "setUnitConcept";\r\n    srcValueQuantity.code as srcValueCode -> tgt.unit_source_value = srcValueCode "setUnitSourceValue";\r\n  } "SetValue";\r\n  src.referenceRange as srcRange then {\r\n    srcRange.low as srcRangeLow then {\r\n      srcRangeLow.value as srcRangeLowValue -> tgt.range_low = srcRangeLowValue "setRangeLow1";\r\n    } "setRangeLow0";\r\n    srcRange.high as srcRangeHigh then {\r\n      srcRangeHigh.value as srcRangeHighValue -> tgt.range_high = srcRangeHighValue "setRangeHigh1";\r\n    } "setRangeHigh0";\r\n  } "setRange";\r\n  src.performer as srcPerformer -> tgt.provider_id = srcPerformer "setPerformer"; // reference impropre dans le monde OMOP mais permet d'illustrer l'information qui doit être utilisée pour retrouver le bon OMOPProvider\r\n}\r\n\r\n
" }, "url" : "https://interop.aphp.fr/ig/fhir/dm/StructureMap/CoreSimpleObservation2OMOPMeasurement", "version" : "0.1.0", "name" : "CoreSimpleObservation2OMOPMeasurement", "title" : "Mapping simple Observation laboratory resources to Measurement OMOP Domain", "status" : "draft", "date" : "2026-04-16T14:35:38+00:00", "publisher" : "AP-HP", "contact" : [{ "name" : "AP-HP", "telecom" : [{ "system" : "url", "value" : "https://aphp.fr" }] }], "description" : "Mapping simple Observation laboratory resources to Measurement OMOP Domain", "jurisdiction" : [{ "coding" : [{ "system" : "urn:iso:std:iso:3166", "code" : "FR" }] }], "structure" : [{ "url" : "http://hl7.org/fhir/StructureDefinition/Observation", "mode" : "source", "alias" : "LabObs" }, { "url" : "https://interop.aphp.fr/ig/fhir/dm/StructureDefinition/OMOPMeasurement", "mode" : "target", "alias" : "MeasurementTable" }], "group" : [{ "name" : "SimpleObservation", "typeMode" : "none", "input" : [{ "name" : "src", "type" : "LabObs", "mode" : "source" }, { "name" : "tgt", "type" : "MeasurementTable", "mode" : "target" }], "rule" : [{ "name" : "setSubject", "source" : [{ "context" : "src", "element" : "subject", "variable" : "srcSubject" }], "target" : [{ "context" : "tgt", "contextType" : "variable", "element" : "person_id", "transform" : "copy", "parameter" : [{ "valueId" : "srcSubject" }] }], "documentation" : "reference impropre dans le monde OMOP mais permet d'illustrer l'information qui doit être utilisée pour retrouver la bonne OMOPPerson" }, { "name" : "createMeasurementConcept", "source" : [{ "context" : "src", "element" : "code", "variable" : "srcCode" }], "target" : [{ "context" : "tgt", "contextType" : "variable", "element" : "measurement_concept_id", "variable" : "tgtReference", "transform" : "create", "parameter" : [{ "valueString" : "Reference" }] }], "rule" : [{ "name" : "setMeasurementConcept", "source" : [{ "context" : "srcCode", "element" : "coding", "variable" : "srcCoding" }], "target" : [{ "contextType" : "variable", "variable" : "measurementCode", "transform" : "translate", "parameter" : [{ "valueId" : "srcCoding" }, { "valueString" : "https://interop.aphp.fr/ig/fhir/dm/ConceptMap/LabAnalyses" }, { "valueString" : "code" }] }, { "context" : "tgtReference", "contextType" : "variable", "element" : "reference", "transform" : "append", "parameter" : [{ "valueString" : "Concept/" }, { "valueId" : "measurementCode" }] }] }] }, { "name" : "SetDate", "source" : [{ "context" : "src", "type" : "dateTime", "element" : "effective", "variable" : "srcDateTime" }], "rule" : [{ "name" : "setDateTime", "source" : [{ "context" : "srcDateTime" }], "target" : [{ "context" : "tgt", "contextType" : "variable", "element" : "measurement_datetime", "transform" : "copy", "parameter" : [{ "valueId" : "srcDateTime" }] }] }, { "name" : "setDateNotTime", "source" : [{ "context" : "srcDateTime" }], "target" : [{ "context" : "tgt", "contextType" : "variable", "element" : "measurement_date", "transform" : "evaluate", "parameter" : [{ "valueString" : "%srcDateTime.toString().substring(0, 10)" }] }] }] }, { "name" : "SetValue", "source" : [{ "context" : "src", "type" : "Quantity", "element" : "value", "variable" : "srcValueQuantity" }], "rule" : [{ "name" : "setResultValue", "source" : [{ "context" : "srcValueQuantity", "element" : "value", "variable" : "srcResultValue" }], "target" : [{ "context" : "tgt", "contextType" : "variable", "element" : "value_as_number", "transform" : "copy", "parameter" : [{ "valueId" : "srcResultValue" }] }] }, { "name" : "createComparatorConcept", "source" : [{ "context" : "srcValueQuantity" }], "target" : [{ "context" : "tgt", "contextType" : "variable", "element" : "operator_concept_id", "variable" : "tgtReference", "transform" : "create", "parameter" : [{ "valueString" : "Reference" }] }], "rule" : [{ "name" : "setComparatorConcept", "source" : [{ "context" : "srcValueQuantity", "element" : "comparator", "variable" : "srcValueComparator" }], "target" : [{ "contextType" : "variable", "variable" : "comparatorCode", "transform" : "translate", "parameter" : [{ "valueId" : "srcValueComparator" }, { "valueString" : "https://interop.aphp.fr/ig/fhir/dm/ConceptMap/LabComparator" }, { "valueString" : "code" }] }, { "context" : "tgtReference", "contextType" : "variable", "element" : "reference", "transform" : "append", "parameter" : [{ "valueString" : "Concept/" }, { "valueId" : "comparatorCode" }] }] }] }, { "name" : "setUnitConcept", "source" : [{ "context" : "srcValueQuantity" }], "target" : [{ "context" : "tgt", "contextType" : "variable", "element" : "unit_concept_id", "variable" : "tgtReference", "transform" : "create", "parameter" : [{ "valueString" : "Reference" }] }], "rule" : [{ "name" : "createUnitConcept", "source" : [{ "context" : "srcValueQuantity", "element" : "code", "variable" : "srcValueCode" }], "target" : [{ "contextType" : "variable", "variable" : "unitCode", "transform" : "translate", "parameter" : [{ "valueId" : "srcValueCode" }, { "valueString" : "https://interop.aphp.fr/ig/fhir/dm/ConceptMap/LabUnit" }, { "valueString" : "code" }] }, { "context" : "tgtReference", "contextType" : "variable", "element" : "reference", "transform" : "append", "parameter" : [{ "valueString" : "Concept/" }, { "valueId" : "unitCode" }] }] }] }, { "name" : "setUnitSourceValue", "source" : [{ "context" : "srcValueQuantity", "element" : "code", "variable" : "srcValueCode" }], "target" : [{ "context" : "tgt", "contextType" : "variable", "element" : "unit_source_value", "transform" : "copy", "parameter" : [{ "valueId" : "srcValueCode" }] }] }] }, { "name" : "setRange", "source" : [{ "context" : "src", "element" : "referenceRange", "variable" : "srcRange" }], "rule" : [{ "name" : "setRangeLow0", "source" : [{ "context" : "srcRange", "element" : "low", "variable" : "srcRangeLow" }], "rule" : [{ "name" : "setRangeLow1", "source" : [{ "context" : "srcRangeLow", "element" : "value", "variable" : "srcRangeLowValue" }], "target" : [{ "context" : "tgt", "contextType" : "variable", "element" : "range_low", "transform" : "copy", "parameter" : [{ "valueId" : "srcRangeLowValue" }] }] }] }, { "name" : "setRangeHigh0", "source" : [{ "context" : "srcRange", "element" : "high", "variable" : "srcRangeHigh" }], "rule" : [{ "name" : "setRangeHigh1", "source" : [{ "context" : "srcRangeHigh", "element" : "value", "variable" : "srcRangeHighValue" }], "target" : [{ "context" : "tgt", "contextType" : "variable", "element" : "range_high", "transform" : "copy", "parameter" : [{ "valueId" : "srcRangeHighValue" }] }] }] }] }, { "name" : "setPerformer", "source" : [{ "context" : "src", "element" : "performer", "variable" : "srcPerformer" }], "target" : [{ "context" : "tgt", "contextType" : "variable", "element" : "provider_id", "transform" : "copy", "parameter" : [{ "valueId" : "srcPerformer" }] }], "documentation" : "reference impropre dans le monde OMOP mais permet d'illustrer l'information qui doit être utilisée pour retrouver le bon OMOPProvider" }] }] }